PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29569.m000148

Common Name

RCOM_0452700

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

FAR1

Protein Properties

Length: 225aa MW: 25898.7 Da PI: 7.1537

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29569.m000148	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.7e-27	60	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++ra+tr gCka+++vk +k+gkw++tk++++HnH+l+ 29569.m000148 60 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSVRGKFGNVRKPRASTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 148 9*************************************99999999*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-25	60	148	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MELDLDEGVL IAESSAGQEL AVQEGDLVVH EGDLVVPECG SIVEPHEGME FESEDAAKIF 60 YDEYARRVGF VMRVMSCRRS ERDGRILARR LGCNKEGYCV SVRGKFGNVR KPRASTREGC 120 KAMIHVKFDK SGKWVITKFV KDHNHPLVVA PREARQTMDE KDKRIQELTM ELRNKKRLCA 180 TYQDQLTAFM KIVEEHSVQL SKKVQDVVRN LKEFESIEQE LMQHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29569.m000148

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583373.1	1e-164	protein FAR1-RELATED SEQUENCE 2
TrEMBL	B9T541	1e-165	B9T541_RICCO; Uncharacterized protein
STRING	XP_002533360.1	1e-166	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-110	FAR1 family protein

Link Out ? help Back to Top
Phytozome	29569.m000148