PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29576.m000233

Common Name

LOC8262321, RCOM_0454040

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 441aa MW: 50759.2 Da PI: 6.5488

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29576.m000233	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.6	1.9e-24	116	212	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+m+erg +sp+qC++k+++lnkrykk++++ +++ +++++++ +++d 29576.m000233 116 KWTDKMVRLLITAVSYIGEDVTSDYgsgmrrkfsvlQKKGKWKSVSKVMAERGHLVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDV 211 7************999999986444566778888********************************************56999988888776 PP trihelix 85 l 85 + 29576.m000233 212 I 212 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-22	114	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEGNLSQGGI FGGFDLQGST RVHHHQEQHQ HAVHHQQNPL HRQGSSVQPS THEGFPLAMG 60 TMRNSDQIIS MTDYNKGDKG KNSASDEDEP SYTEDGADGH NDPSRGKKGS PWQRVKWTDK 120 MVRLLITAVS YIGEDVTSDY GSGMRRKFSV LQKKGKWKSV SKVMAERGHL VSPQQCEDKF 180 NDLNKRYKKL NDMLGRGTSC QVVENPALLD VIDYLTEKEK DDVRKILSSK HLFYEEMCSY 240 HNGNRLHLPH DPALQRSLQL ALRSKDGHDN DDVRRHQHDD MDEDDQEVET DDHDEFAETQ 300 ASHGESRGIH GLLGGSAKRL RQGQGHEDVC FVNSSQDGNK GSHSNFQISE VDMNQNSPEC 360 TKAAWLQKQW MESRALQLEE QKLQIQIETL ELEKQRFKWQ RFSRKRDREL EKLRMENERM 420 KLENERMALE LKQKEISVDF N

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEGNLSQGGI FGGFDLQGST RVHHHQEQHQ HAVHHQQNPL HRQGSSVQPS THEGFPLAMG  60
TMRNSDQIIS MTDYNKGDKG KNSASDEDEP SYTEDGADGH NDPSRGKKGS PWQRVKWTDK  120
MVRLLITAVS YIGEDVTSDY GSGMRRKFSV LQKKGKWKSV SKVMAERGHL VSPQQCEDKF  180
NDLNKRYKKL NDMLGRGTSC QVVENPALLD VIDYLTEKEK DDVRKILSSK HLFYEEMCSY  240
HNGNRLHLPH DPALQRSLQL ALRSKDGHDN DDVRRHQHDD MDEDDQEVET DDHDEFAETQ  300
ASHGESRGIH GLLGGSAKRL RQGQGHEDVC FVNSSQDGNK GSHSNFQISE VDMNQNSPEC  360
TKAAWLQKQW MESRALQLEE QKLQIQIETL ELEKQRFKWQ RFSRKRDREL EKLRMENERM  420
KLENERMALE LKQKEISVDF N

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29576.m000233

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002532438.1	0.0	uncharacterized protein LOC8262321
TrEMBL	B9T2G9	0.0	B9T2G9_RICCO; Transcription factor, putative
STRING	XP_002532438.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-165	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	29576.m000233
Entrez Gene	8262321