PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29584.m000234
Common NameRCOM_0463380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 225aa    MW: 25555.5 Da    PI: 4.9509
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29584.m000234genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1896146255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  29584.m000234  96 SYRGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFSMRG 146
                    69*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.08E-1995155No hitNo description
PfamPF008478.0E-1396146IPR001471AP2/ERF domain
SMARTSM003808.4E-3796160IPR001471AP2/ERF domain
PROSITE profilePS5103222.77496154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3096155IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2296156IPR016177DNA-binding domain
PRINTSPR003674.1E-1097108IPR001471AP2/ERF domain
PRINTSPR003674.1E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEPSLFHQYL KPEIISFDSL QPFSWELEDD GFLFHPPSSL PFDCNDSEQM ILFDVLSKAT  60
NRDQSSESNS TSSRVKEEEV SSSKEEEVST GKKEKSYRGV RKRPWGKYAA EIRDSTRNGI  120
RVWLGTFDSA EAAALAYDQA AFSMRGSMAI LNFPVEMVRE SMQEIKYRCE DGCSPVVALK  180
RRHSMRRNSS STESKGKEVN NNRTQHVVVL EDLGAEYLEE LLSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2889156774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29584.m000234
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582817.11e-131ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y94e-71ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLB9T2931e-166B9T293_RICCO; Ethylene-responsive transcription factor 1B, putative (Fragment)
STRINGXP_002532362.11e-167(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-56ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]