PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29584.m000235
Common NameLOC8277474, RCOM_0463490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 154aa    MW: 17261.8 Da    PI: 7.756
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29584.m000235genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182071256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +++g+
  29584.m000235 20 RYRGIRRRP-WGKFAAEIRDPTRNG--ARRWLGTFETAEEAARAYDRAAFAFRGH 71
                   69*******.**********98887..*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.19E-271979No hitNo description
PfamPF008472.3E-122071IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-302080IPR001471AP2/ERF domain
SMARTSM003803.6E-352085IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-232079IPR016177DNA-binding domain
PROSITE profilePS5103224.7372078IPR001471AP2/ERF domain
PRINTSPR003679.2E-112132IPR001471AP2/ERF domain
PRINTSPR003679.2E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEASQKNSKK QSRGGSGEAR YRGIRRRPWG KFAAEIRDPT RNGARRWLGT FETAEEAARA  60
YDRAAFAFRG HLAILNFPNE YQYNSQSHEL SFASSSTSAS SSSSLMSSNS FSSAPPSRNA  120
TIGSSAGQEV IEFEYLDDKL LEDLLETQEY DRHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-29151409114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29584.m000235
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532363.11e-109ethylene-responsive transcription factor ERF098
SwissprotQ9LTC55e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9T2941e-108B9T294_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002532363.11e-108(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]