PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29585.m000597
Common NameRCOM_0465420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 137aa    MW: 15450.7 Da    PI: 10.309
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29585.m000597genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-14521271393
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                    +++l++p +f+++h++    ++  ++    +++W vkl++  ++ + ++++GW+ F+k+n Lk+g    F+l++r+e   +
  29585.m000597  52 ENILSVPFSFVQSHMEC---ETHTVMLKVANKTWPVKLNVYSRKHTAIFSAGWSAFAKQNSLKVGSAYNFELIKRDEM--T 127
                    4889**********744...44456666789*******5555555599************************986433..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1638131IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-1839132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.91240134IPR003340B3 DNA binding domain
CDDcd100171.72E-1343131No hitNo description
SMARTSM010194.4E-945137IPR003340B3 DNA binding domain
PfamPF023621.9E-1152127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MASQEGREML DKKGISRQAK KPSSFSTCQA PDSANNFISS NYPSFRAVFR HENILSVPFS  60
FVQSHMECET HTVMLKVANK TWPVKLNVYS RKHTAIFSAG WSAFAKQNSL KVGSAYNFEL  120
IKRDEMTVSK FTTCKLG
Cis-element ? help Back to Top
SourceLink
PlantRegMap29585.m000597
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015580399.14e-92B3 domain-containing protein At5g18000
TrEMBLB9SR362e-98B9SR36_RICCO; Uncharacterized protein
STRINGXP_002528455.13e-99(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.14e-09VERDANDI