PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29585.m000603

Common Name

RCOM_0465580

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 143aa MW: 16252.6 Da PI: 10.1872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29585.m000603	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8.3e-06	63	101	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L++A YIk Lq 29585.m000603 63 RSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 101 7899***********99.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.04E-6	49	105	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-8	50	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.362	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.14E-9	63	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MRKRSIDVIS QLHQGGITNL TENTTFSDWK SNKRRKATSF EEQWLHQVQK SSNVKEQKVT 60 VTRSQKLSDK ITALQKLVSP YGKTDTASVL QEASLYIKLL QQQIQNLFQM LSSSCPSQKI 120 DGEMLDLQSK GLCLFPTSLK MDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29585.m000603

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580400.1	4e-96	uncharacterized protein LOC8265985 isoform X1
Refseq	XP_015580401.1	4e-96	uncharacterized protein LOC8265985 isoform X1
Refseq	XP_015580402.1	4e-96	transcription factor bHLH133 isoform X2
Swissprot	Q9LT67	9e-17	BH113_ARATH; Transcription factor bHLH113
TrEMBL	B9SR42	2e-99	B9SR42_RICCO; Uncharacterized protein
STRING	XP_002528461.1	1e-100	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13355	15	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	4e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	29585.m000603

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]