PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29585.m000611
Common NameLOC8265993, RCOM_0466460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 190aa    MW: 20775.8 Da    PI: 9.1963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29585.m000611genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00164971123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  29585.m000611 49 FECKTCNRQFPSFQALGGHRASH 71
                   89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.44E-947118No hitNo description
PfamPF139123.2E-134873IPR007087Zinc finger, C2H2
SMARTSM003550.164971IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139126.4E-1095120IPR007087Zinc finger, C2H2
SMARTSM003550.596118IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.97496123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MKRSFREAEI DSLSMANCLM LLSQGREIVS FPSFEAMKGT NINSSNRVFE CKTCNRQFPS  60
FQALGGHRAS HKKPRLTNGD VGSLETQSSP AKPKTHECSI CGLEFAIGQA LGGHMRRHRA  120
INNDSSSLST PSPTSSAELM AVKPAGVAPP VMKKSNSRRV LCLDLNLTPY ENDVELFRLG  180
KTAPMVDCFL
Cis-element ? help Back to Top
SourceLink
PlantRegMap29585.m000611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528469.11e-139zinc finger protein ZAT11
TrEMBLB9SR501e-138B9SR50_RICCO; Nucleic acid binding protein, putative
STRINGXP_002528469.11e-139(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-40C2H2 family protein