PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29586.m000615
Common NameLOC8265025, RCOM_0467650
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YC
Protein Properties Length: 237aa    MW: 27098.9 Da    PI: 5.6068
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29586.m000615genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC126.51e-39721752100
          NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif.dfl 92 
                    l++fw++q   i++ + fk nh+lPlarik+i+k+  +vkmis ++Pvl++kacelfi eltlrswl++e +krrtl+++dia a+++  i  +fl
  29586.m000615  72 LQMFWNQQlldIQNISTFKnNHQLPLARIKRIMKSGGEVKMISGDTPVLFAKACELFISELTLRSWLQTEGCKRRTLQRCDIARAIKHDPILqKFL 167
                    89******9888999999988******************************************************************9887637** PP

          NF-YC  93 vdivprde 100
                    +d +p d+
  29586.m000615 168 LDSIPYDH 175
                    *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.21E-2650160IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.3E-3190158IPR009072Histone-fold
PfamPF008084.7E-1694157IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKRSLGRSLE EGAQPGMDLN QSIEFNSSSA TSPPVHNFMP MSSFMLPHHR PVEEECQKAW  60
NSRSMQGEKH NLQMFWNQQL LDIQNISTFK NNHQLPLARI KRIMKSGGEV KMISGDTPVL  120
FAKACELFIS ELTLRSWLQT EGCKRRTLQR CDIARAIKHD PILQKFLLDS IPYDHCKADE  180
IEKCDEEVEP LPPVEGPLPM IDINEDFVLT NHETPEESMM RPSLSSSAEF NYETGPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-2879172394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29586.m000615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528069.11e-178nuclear transcription factor Y subunit C-10
TrEMBLB9SQ001e-177B9SQ00_RICCO; Ccaat-binding transcription factor, putative
STRINGXP_002528069.11e-177(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-36nuclear factor Y, subunit C2