PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29589.m001239
Common NameRCOM_0473570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 49aa    MW: 5400.19 Da    PI: 8.7432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29589.m001239genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.8e-101446132
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                     +g+W++eEd +l+d+++++G+g +W + +++ g
    29589.m001239 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPQKAG 46
                     79***********************99998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-12544IPR009057Homeodomain-like
SuperFamilySSF466897.11E-8844IPR009057Homeodomain-like
PROSITE profilePS5129410.314949IPR017930Myb domain
PfamPF002492.0E-81446IPR001005SANT/Myb domain
CDDcd001673.47E-51638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPQKAGTFI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29589.m001239
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527211e-44KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385522.11e-26transcription factor RAX2-like
RefseqXP_009356918.11e-26PREDICTED: transcription factor RAX1-like
RefseqXP_015577582.12e-27transcription factor RAX2
RefseqXP_023731816.11e-26methylthioribose-1-phosphate isomerase-like isoform X1
SwissprotQ9FKL22e-26MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A498INI42e-25A0A498INI4_MALDO; Uncharacterized protein
TrEMBLB9SCI32e-28B9SCI3_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002523702.13e-29(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-29myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]