PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29589.m001259
Common NameRCOM_0474880
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 162aa    MW: 18685.6 Da    PI: 4.3255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29589.m001259genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-05137159729
                    HHHHHHHHHHHHHHHHHHCTSCC CS
            HLH   7 erErrRRdriNsafeeLrellPk 29 
                    + Er+RR r+++++  Lr+l+P+
  29589.m001259 137 ISERKRRGRMKEKLYALRSLVPN 159
                    67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-6124161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.283130162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-5131160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.55E-5132162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDMVNDANLQ MVHTNNFELY DFTAEANFDQ FIDLIRGENE DQISRFDCDL INGLLVDNQI  60
GNPTHQEELF DFSTATTPIY TSAMVPDQNY SLPSFDGDMK ELEEDFDEEE DHSSGTTTTT  120
PTATRRKTKT DRSRTLISER KRRGRMKEKL YALRSLVPNI TK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124142RRKTKTDRSRTLISERKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap29589.m001259
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013947.11e-117transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLB9SCK31e-116B9SCK3_RICCO; Uncharacterized protein
STRINGXP_002523722.11e-117(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36793358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-16FER-like regulator of iron uptake