PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29596.m000720
Common NameRCOM_0482900
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GATA
Protein Properties Length: 324aa    MW: 35525.2 Da    PI: 7.919
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29596.m000720genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.4e-17210246135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  29596.m000720 210 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWANRGS 246
                    *********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.8E-1174109IPR010399Tify domain
PROSITE profilePS5132014.13474109IPR010399Tify domain
PfamPF062005.8E-1278108IPR010399Tify domain
PfamPF062031.4E-15142184IPR010402CCT domain
PROSITE profilePS5101712.739142184IPR010402CCT domain
SuperFamilySSF577161.62E-10203246No hitNo description
SMARTSM004012.2E-14204258IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.249204245IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14208245IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.98E-14209248No hitNo description
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
PfamPF003204.8E-15210246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MYSHSQSMNV HHQIHTPTGP TGDDEDGVAA DSIDHHHIRY EDGNATGVVL EDDVSHDSVY  60
VPTSAAGSEL AIQGNDVSSQ LTLTFRGQVY VFDAVTPDKV QAVLLLLGGC ELTSGPHGLE  120
VASQNQRSAV VDYPGRCTQP QRAASLNRFR QKRKERNFDK KVRYSVRQEV ALRMQRNKGQ  180
FTSSKKSDGT YGWGGGQDSG QDDSQQETSC THCGTSSKST PMMRRGPSGP RSLCNACGLF  240
WANRGSAMQR LNIFVGGSGV HFHALANALV WKNVHRQVME MNNVRGNFER SVQENPGSFS  300
ESNGAASNQR LKFQVVSQQQ PDQQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29596.m000720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579795.10.0GATA transcription factor 25
SwissprotQ9LRH69e-82GAT25_ARATH; GATA transcription factor 25
TrEMBLB9SN010.0B9SN01_RICCO; GATA transcription factor, putative
STRINGXP_002527370.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.26e-72GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]