PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29598.m000464
Common NameLOC8269334, RCOM_0484610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 326aa    MW: 34608 Da    PI: 5.6138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29598.m000464genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.6e-09174218554
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+a      K + a++  + v+Y+k L
  29598.m000464 174 HSIAERLRRERIAERMKALQELVPTA-----NKTDRAAMIDEIVDYVKFL 218
                    99***********************8.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-10167223No hitNo description
SuperFamilySSF474591.96E-14167229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.84169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14171231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6174218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAGNPPPEGL GDDFFEQILA VQPGYGGGDG GGGGDVVGST MPMMGLQLGS ASSGGGGLRT  60
NNMGMMPLGL NLEFLRQQED GSGALDNNNH TNNNNNNVSS STTSVINDRD SVHMASLFPT  120
FGQLQTQTLR PPPPPHLHQP FHGQPTPGVV SAASQPPAIR PRVRARRGQA TDPHSIAERL  180
RRERIAERMK ALQELVPTAN KTDRAAMIDE IVDYVKFLRL QVKVLSMSRL GAAGAVAQLV  240
ADVPLASVEG ESIDGAAANQ QTWEKWSNDG TEQQVAKLME EDIGAAMQFL QSKALCIMPI  300
SLASAILRTH PPDAPSIIKP ESNTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29598.m000464
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582160.10.0transcription factor UNE12
SwissprotO227683e-86UNE12_ARATH; Transcription factor UNE12
TrEMBLB9SZ730.0B9SZ73_RICCO; Uncharacterized protein
STRINGXP_002531293.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]