PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29609.m000586
Common NameRCOM_0496610
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 620aa    MW: 70440.2 Da    PI: 6.4072
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29609.m000586genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.4e-20150250198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f  +lt sd ++++ + +  k+ae++       +  +   ++l+ +d++g++W +++i+++ks++++lt+GW+ Fv++++L +gD+++F   + ++
  29609.m000586 150 FRRILTVSDISSHDHFFVDQKHAEHClppldmsQ--QLPWQELVATDLNGNKWHFQHIFQGKSNKHLLTTGWSAFVSSKKLVSGDMFIFL--RGEN 241
                    66788999***************888***98542..333458************************************************..4499 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    +el+v+v+r
  29609.m000586 242 GELRVGVRR 250
                    99*****97 PP
2Auxin_resp95.86.5e-32276354282
     Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                    + a+st+s F v+Y+Pr+s+seF+v+v+k+ +a ++k+++GmRf m+fe+e+++  r+ Gt+v++++ +p rWp+S+Wr+ 
  29609.m000586 276 SYAISTGSLFCVFYEPRTSRSEFIVSVNKYIEARNHKFCIGMRFLMRFEGEEVPIERINGTIVSMET-SP-RWPDSEWRCF 354
                    6799**************************************************************9.77.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-31147263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-25148254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-17148250No hitNo description
PfamPF023626.8E-17150250IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308150252IPR003340B3 DNA binding domain
SMARTSM010192.0E-14150252IPR003340B3 DNA binding domain
PfamPF065076.6E-30275355IPR010525Auxin response factor
PROSITE profilePS5174516.397537620IPR000270PB1 domain
SuperFamilySSF542774.51E-5542614No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MCFKIERNTI WYRQEIHQAE LWCLGGIGCP SWRQVQFQNC CNNALYKELW DACAGPLVTL  60
PREGERVYYF PQGHIEQLGA PIQQQSEHQM ASLNLPSKIL CKVINVQCKA EPITDQVYAQ  120
IMLLPEPEQI DVISPDPPLP EPERCVVHSF RRILTVSDIS SHDHFFVDQK HAEHCLPPLD  180
MSQQLPWQEL VATDLNGNKW HFQHIFQGKS NKHLLTTGWS AFVSSKKLVS GDMFIFLRGE  240
NGELRVGVRR LMGRKTNILS SATSNQIRHS LLAVASYAIS TGSLFCVFYE PRTSRSEFIV  300
SVNKYIEARN HKFCIGMRFL MRFEGEEVPI ERINGTIVSM ETSPRWPDSE WRCFKVRWDE  360
PSLIVHPERV SPWEMENISS SSQPVPRTKR SRSSSPGAME ISPSSTQPGP RIKQLRSTVF  420
LSQTPDFGMW IFPAEVPGFS NCDLYLSSSS STNSKTYSSD FRGDSSQAST SPNRVVYVTE  480
SAPSVNKDFG MEEDGCPVLS LENESDQHSE TANINQSEKL SVISCDTEKL CSKKQITSCA  540
EVRMQGIALG RSIDLTKFKC HEDLIKELEN MFEIEGELSG STKKWLIVYT DADSEMKLVG  600
DYQWEVVCNM VKKILIYRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1614238316360Auxin response factor 1
4ldy_B1e-1614238316360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29609.m000586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527834.20.0auxin response factor 1 isoform X1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLB9SPB50.0B9SPB5_RICCO; Auxin response factor
STRINGXP_002527834.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]