PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29610.m000402
Common NameLOC8287262, RCOM_0498420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 393aa    MW: 43953.4 Da    PI: 6.9939
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29610.m000402genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix781.4e-24281367186
       trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW++ ev+aLi +r  +e+++r  g++  + W+e+s  m   g++r++k+Ckekwen+nk+++k   + +k++ ++s++cpyf++l+
  29610.m000402 281 RWPEAEVQALIMLRAGLEQKFRVmGAKCSNVWDEISVGMCNMGYNRTAKKCKEKWENINKYFRKSMGSGGKKRYDNSKSCPYFHELD 367
                    8*********************7467779*******************************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-5271338IPR009057Homeodomain-like
PROSITE profilePS500907.642274339IPR017877Myb-like domain
CDDcd122033.71E-26280345No hitNo description
PfamPF138373.7E-19280367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MELLTGGNRQ GPNASGFPPQ ISPLSATENY LVSYSTSAFQ PSPPQKLRPI RANGRSPSSS  60
QGNDLTLTGG GGLDGTLDNL GLLVDQVCGL DDEGNEFLKP LVKVENSGTQ CTESGGSGRV  120
GRNLDPNCEG ELLEVESSSF SGDDDSSAGI TKCGSRKRRR NTSLHKLEKF LESLVMKVLD  180
KQERMHTQLI ETMERRERER IIREEAWKQQ EIERMKRDEE VRAQENARNL ALISFIQDVM  240
GHNIEVPQPL TSIALPEKVT ERNGSNVPIQ KDFNSDLSNR RWPEAEVQAL IMLRAGLEQK  300
FRVMGAKCSN VWDEISVGMC NMGYNRTAKK CKEKWENINK YFRKSMGSGG KKRYDNSKSC  360
PYFHELDILY KNGFVSPGNV SDHTNIENET KIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29610.m000402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530410.10.0trihelix transcription factor GTL1
TrEMBLB9SWP10.0B9SWP1_RICCO; Transcription factor, putative
STRINGXP_002530410.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-51Trihelix family protein