PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29620.m000559
Common NameLOC8265598, RCOM_0512220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 456aa    MW: 49406.8 Da    PI: 7.9196
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29620.m000559genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.6e-115581127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++++ C +++rtG C yG++C+F+H+p
  29620.m000559 55 PGEPDCVYYLRTGLCGYGNNCRFNHPP 81
                   5789*********************97 PP
2zf-CCCH36.48.7e-1299123327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C ++++tGtCkyG++Ck++H++
  29620.m000559  99 QPDCGYYLKTGTCKYGSTCKYHHPR 123
                    789********************96 PP
3zf-CCCH38.32.3e-12145168427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    + C++++rtG Ck+G  CkF+H++
  29620.m000559 145 KSCPYYMRTGSCKFGVACKFHHPQ 168
                    66********************97 PP
4zf-CCCH39.59.2e-13293318227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++Cr+f+ tGtCkyG+ Ck++H++
  29620.m000559 293 DQPECRYFMNTGTCKYGSDCKYHHPK 318
                    689*********************96 PP
5zf-CCCH33.47.4e-11338364127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++++ +G Ck+G++C+F H++
  29620.m000559 338 PGQPICSNYSMYGLCKFGPTCRFDHPF 364
                    5789*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.7E-75481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7325482IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-85681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-65980IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-46079IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.64396124IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-596123IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-999123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4102123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6140169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352141169IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5143168IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5146167IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.643291319IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7294320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6297318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-6337363IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202337365IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-7339364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MPDNSNNNNS NRQVKSNAVS NQSPDNIEEA IWRLKIHDNQ EQGGMAPSSP YPDRPGEPDC  60
VYYLRTGLCG YGNNCRFNHP PYAAQGNQFK EELPERVGQP DCGYYLKTGT CKYGSTCKYH  120
HPRDRNGAGP VSFNIVGLPM RQDEKSCPYY MRTGSCKFGV ACKFHHPQPA PLGTGLPFTG  180
PAASGPMASS NLPSSGLPYV GGLPTWSLPR APYVSGPRLQ GPQTYMPAVL SPSQGVVAAQ  240
GWNTYVGNLS PMSSGSVLGS SIVYNSRNQS ESGSSGQVHM LSTTSSNLPE RPDQPECRYF  300
MNTGTCKYGS DCKYHHPKER IAQLATNSIG PVGLPSRPGQ PICSNYSMYG LCKFGPTCRF  360
DHPFTGYPYG YSLSLQPLSI IDSSLLSYPR MSPPALSSES PISLSSKFPD WVQNPDGASS  420
KHQNSDRNTK ISDDQPEQAG SPPPHSSQAS SEPSHD
Cis-element ? help Back to Top
SourceLink
PlantRegMap29620.m000559
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528968.10.0zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLB9SSJ90.0B9SSJ9_RICCO; Zinc finger protein, putative
STRINGXP_002528968.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-124C3H family protein