PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29623.m000322
Common NameLOC8281449, RCOM_0512940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Nin-like
Protein Properties Length: 951aa    MW: 105254 Da    PI: 6.6428
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29623.m000322genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.27.8e-29630680252
         RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    ek+isle+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rk+k++
  29623.m000322 630 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKLKKV 680
                    79***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.723619700IPR003035RWP-RK domain
PfamPF020427.3E-25632680IPR003035RWP-RK domain
SuperFamilySSF542773.19E-24841937No hitNo description
Gene3DG3DSA:3.10.20.2405.2E-24849932No hitNo description
PROSITE profilePS5174526.784851934IPR000270PB1 domain
PfamPF005641.6E-18851933IPR000270PB1 domain
SMARTSM006662.7E-27851934IPR000270PB1 domain
CDDcd064075.52E-40852933No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 951 aa     Download sequence    Send to blast
MDDDGASKPD STSGSFSGAA MDLDFMDELL YDGCWLETTD GFSYPQTGSS TSTMTDSRSF  60
PLIESSSSLA STNPHQQIHQ EATEDNVPEN PSTPLCNLNV KELTETQSQH CSVKNTTSLV  120
QSEGFLNEGS ELSKSLWIGP KADPGPSSSV KQRLMDAIKH LKQYTKDSEV LVQIWVPTKK  180
EGKRVLTTFD QPCFLSLNSE SLANYRYVSE TYHFSVEGDS KDFLGLPGRV FLRKLPESTP  240
DVRFFRREEY PRKSYAKQYN ISGSLAVPVF ERGTGTCLGV VEVVTTSRNI NYRSELETIC  300
KALEAFDLRS SHDFCPPSVK ACKEFCQSAV PEISEILGSV CKKHKLPLAL TWARCFQQGK  360
GGCRHFDEKF ANCISTVDSA CCVADRELYA FHIACSELYL SLGQGIVGKA FTTNKQCFAT  420
DITSFSQTDY PLSHHAKVLD LHAAVAIPLR SAYTGSADFV LELFLPKDCR DIEEQKAMWD  480
LVPTAIQQAC QNLHVVMEKE LEEDISWQIP VALDGRHNKQ VTHNIASSLK EPFAEGSSWI  540
AQMVEAQRKG KNVCVSWDSP KEPKEEFKVA THWGDALEEL YHKQVLTGTG LLQQDAATKD  600
SITDGCSNPF AGQHSSGNRK AGEKRRTKTE KTISLEVLRQ YFAGSLKDAA KSIGVCPTTL  660
KRICRQHGIT RWPSRKLKKV GHSLKKLQLV IDSVQGAEGA IQIGSFYTTF PELTSPNYGG  720
NGPFTSLKMN DDSKPVNFQP ENGFINAGTT ASKSPSSSCS QSSGSSICCS TGEKHKITNN  780
ALNTGDGLTV ENPSGVLKRT RSDAELHALY RPESKPLARS QSHKLLADHP SIDTLPPFPK  840
GSSQSLRDSG TFRVKANFGE DKVRFSLQPN WDFKDLQQEL AKRFGIHEGC RTDLKYLDDD  900
HEWVLLTCDA DLEECKDIYR VSQNHTIKIS LHQASQPLRQ LGGDKEGASH E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29623.m000322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527149.10.0protein NLP1
RefseqXP_015579643.10.0protein NLP1
RefseqXP_015579644.10.0protein NLP1
RefseqXP_015579645.10.0protein NLP1
RefseqXP_015579646.10.0protein NLP1
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLB9SMD00.0B9SMD0_RICCO; Uncharacterized protein
STRINGXP_002527149.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein