PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29629.m001382

Common Name

LOC8286837, RCOM_0522070

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NF-YB

Protein Properties

Length: 180aa MW: 19391.4 Da PI: 4.8897

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29629.m001382	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	184.9	6.3e-58	27	122	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++relegek 29629.m001382 27 KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRELEGEK 122 79********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.2E-54	25	130	IPR009072	Histone-fold
SuperFamily	SSF47113	2.95E-40	29	130	IPR009072	Histone-fold
Pfam	PF00808	5.4E-28	32	96	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.2E-21	60	78	No hit	No description
PROSITE pattern	PS00685	0	63	79	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.2E-21	79	97	No hit	No description
PRINTS	PR00615	5.2E-21	98	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MADSDNDSGG TQNPANASNN SDFLSPKEQD RFLPIANVSR IMKKALPANA KISKDAKETV 60 QECVSEFISF VTGEASDKCQ REKRKTINGD DLLWAMTTLG FEEYVEPLKV YLQRFRELEG 120 EKNAAVREKD APGNGGGFGF DGYGGYQGHV YGSSGGFFNQ MGGSGGPEYG GPGTSLGRPR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-47	24	117	4	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29629.m001382

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015577020.1	1e-131	nuclear transcription factor Y subunit B-3
Swissprot	O23310	3e-70	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	B9S9T3	1e-129	B9S9T3_RICCO; Ccaat-binding transcription factor subunit A, putative
STRING	XP_002522752.1	1e-130	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	2e-73	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	29629.m001382
Entrez Gene	8286837

Publications ? help Back to Top
Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]