PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29629.m001435
Common NameLOC8286888, RCOM_0523380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 491aa    MW: 54951.9 Da    PI: 5.9869
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29629.m001435genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71.1e-34211112101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y++++d ++++++sws+ +nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i
  29629.m001435  21 FLLKTYDMVDDTATDDIVSWSSAKNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFVKDQKHLLKNI 107
                    9****************************************************************999.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  29629.m001435 108 HRRK 111
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5917110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3417110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.3E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MEATTSAAAA AGGGGGGPAP FLLKTYDMVD DTATDDIVSW SSAKNSFVVW NPPEFARLLL  60
PTYFKHNNFS SFIRQLNTYG FRKIDPEKWE FANEDFVKDQ KHLLKNIHRR KPIHSHSNPP  120
GSAVDPERAA FDEEIDRLTH EKATLEANIV RYKKQQSAEK LQLEDLMQKV DSMGQRQEKL  180
LAFLEKAVQN PTFVENLAQK IESMDFSAYS KKRRLPQVDH SKSIAENSFV GNHSITRSEF  240
GNVIHQDFSN KLRLELSPAV SDINLVSDST QSSNEDGGSP QRKISGGDPK DAHPRTPCLL  300
FAAEATFELS DTGTSYTYKM DPNFPRRVTA NETPELHLLQ QNLSSNEEVD GHISCHLNLT  360
LASSPLQINR TPYSARMPEL GQEICTSSES KFNENGKESD ARVTLKERYA GEGKTILSSS  420
KEAPNNNQGP AAAPPRVNDI FWEQFLTERP GSSDNEEASS NYRANPYEEQ EDRRSGHGVL  480
RHTKIVEHLS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-211111016129Heat shock factor protein 1
5d5v_B3e-211111016129Heat shock factor protein 1
5d5v_D3e-211111016129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMap29629.m001435
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522803.10.0heat stress transcription factor A-5
RefseqXP_015577029.10.0heat stress transcription factor A-5
RefseqXP_025013787.10.0heat stress transcription factor A-5
RefseqXP_025013788.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-178HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLB9S9Y40.0B9S9Y4_RICCO; DNA binding protein, putative
STRINGXP_002522803.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-177HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]