PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29630.m000811
Common NameLOC8285055, RCOM_0525590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 203aa    MW: 23682 Da    PI: 6.9379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29630.m000811genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.43.2e-24161471128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWk.atgkdkevl 93 
                    lp G+rF+P+  el+v+yLk+k+ g++l++ +vi+++d+y ++P++Lp + ++ + +  w+fFskr+k +         tk+gy   a+    +++
  29630.m000811  16 LPYGYRFRPSKAELLVHYLKRKIMGEQLPA-NVIPTIDVYACNPEQLPfRLFTRGIShIWFFFSKRRKGK-------ILTKDGYYDfASPPRGAIY 103
                    699***************************.99***************5444444442678887776543.......4677777773344455666 PP

            NAM  94 sk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +k         +++lvg  + L fy gr p+g k++W+++e+r+
  29630.m000811 104 EKiepaagsrkTRKLVGFMRRLHFYYGRPPTGIKSRWTIEEFRI 147
                    666666666557777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-3010174IPR003441NAC domain
PROSITE profilePS5100530.14716176IPR003441NAC domain
PfamPF023651.5E-1417147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDGVEAENSN LEELDLPYGY RFRPSKAELL VHYLKRKIMG EQLPANVIPT IDVYACNPEQ  60
LPFRLFTRGI SHIWFFFSKR RKGKILTKDG YYDFASPPRG AIYEKIEPAA GSRKTRKLVG  120
FMRRLHFYYG RPPTGIKSRW TIEEFRIDPD TVDVNKDDHA TKRKVSNLVV CKVKGPLLYP  180
EPWNEISETF CELEEDEVSE EDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-1731732165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29630.m000811
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526101.11e-150NAC domain-containing protein 86
TrEMBLB9SJD21e-149B9SJD2_RICCO; NAC domain-containing protein, putative
STRINGXP_002526101.11e-149(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14452718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.12e-21NAC domain containing protein 86