PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29631.m001038
Common NameLOC8276465, RCOM_0528620
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 189aa    MW: 21470.9 Da    PI: 10.4644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29631.m001038genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.5e-051358554
                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    ++ Er RR ++++ ++ L ++l + +     +K+s    L +A+ ++k++
  29631.m001038 13 RSMKERDRRTQMRHLLSSLASVLSPqL-----PKVSMHLLLDEAISHVKQM 58
                   6799*******************9945.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-9579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.772858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-61071IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEKNTSSSIR LQRSMKERDR RTQMRHLLSS LASVLSPQLP KVSMHLLLDE AISHVKQMHA  60
RIDELKLRKA QAAEGYVQIS RMDDQVAEDN NLRIVRPVLD IRSTAHDSIL EVNLISGLNK  120
NFKLHDVICV RQEEGAQVTS FSSHKVGDRV IYTIKFQAFC PRIGIETVRV HERLKGLIVP  180
GLVTPTRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29631.m001038
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014253.11e-122transcription factor bHLH168
TrEMBLB9SHB61e-135B9SHB6_RICCO; Transcription factor, putative
STRINGXP_002525385.11e-136(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-28bHLH family protein