PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29631.m001039

Common Name

RCOM_0528830

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 157aa MW: 17792.4 Da PI: 10.468

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29631.m001039	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00074	12	59	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 r n+ Er RR +++ +++L ++l + s K++ +Av+++++ 29631.m001039 12 RIQRNMKERDRRTLMKHHLSRLESVLGRQ----SSKMTVPNLIDEAVKHVRE 59 6778*******************999887....6777777777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.06E-8	8	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.394	10	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-6	12	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MDRNTSLSSS ARIQRNMKER DRRTLMKHHL SRLESVLGRQ SSKMTVPNLI DEAVKHVREM 60 HDRIEELKVR KAQAAGGYVQ TSRMDDQVAC KQLKNIETEV NLVSGLNKNF MLHEVIHVLQ 120 EEGAQAISPR IGIDTVRVHE RLKGLMDPGL ATASRSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29631.m001039

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014254.1	2e-94	LOW QUALITY PROTEIN: transcription factor bHLH168-like
TrEMBL	B9SHB7	1e-111	B9SHB7_RICCO; Uncharacterized protein
STRING	XP_002525386.1	1e-111	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	3e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	29631.m001039