PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29631.m001046

Common Name

RCOM_0529200

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

YABBY

Protein Properties

Length: 244aa MW: 28094.1 Da PI: 8.3339

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29631.m001046	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.6	7.6e-67	6	171	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv.ekeesastsv 96 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++k s ++ ++ l ++++++ee + e+ + +++ ++++ +++ 29631.m001046 6 HLFDLPEQICYVQCGFCDTILLVSVPGSSLSMVVTVRCGHCTSLLSVNMMKVSF-VPFQQLLASLTHDQQKEEINLEGPDARKTLdIERSLSMAAC 100 7899******************************************988774.46666666666677777777776665555404444444444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 s + e++++ v +++PPekrqr+Psaynrfikeei+r+ka+nPd++h+eafs+aaknWa P+ih++ 29631.m001046 101 SDDNKLEEDKNPVN--RVINKPPEKRQRAPSAYNRFIKEEIRRLKAENPDMAHKEAFSTAAKNWANNPPIHYK 171 44332333333344..4589*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.2E-65	11	171	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	114	167	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.8E-6	125	197	IPR009071	High mobility group box domain
CDD	cd01390	1.67E-5	126	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVQCG FCDTILLVSV PGSSLSMVVT VRCGHCTSLL SVNMMKVSFV 60 PFQQLLASLT HDQQKEEINL EGPDARKTLD IERSLSMAAC SDDNKLEEDK NPVNRVINKP 120 PEKRQRAPSA YNRFIKEEIR RLKAENPDMA HKEAFSTAAK NWANNPPIHY KEGGENYCRQ 180 EEEKATWSRD AAENKMRIHH RNLIILNRRC MAFCFDKFQV NIEGKSFHER KTPRHSIWAA 240 TPFK

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29631.m001046

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025014264.1	1e-158	axial regulator YABBY 4 isoform X2
Swissprot	Q9LDT3	2e-72	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	B9SHC4	0.0	B9SHC4_RICCO; Axial regulator YABBY4, putative
STRING	XP_002525393.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-74	YABBY family protein

Link Out ? help Back to Top
Phytozome	29631.m001046

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]