PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29633.m000894
Common NameRCOM_0530740
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 240aa    MW: 27548.1 Da    PI: 8.3327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29633.m000894genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018110133123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    ++C++C ksF    +L++H  + H
  29633.m000894 110 WRCGYCRKSFYEERYLNKHFDNrH 133
                    58*****************77666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577127No hitNo description
PROSITE profilePS501578.704110133IPR007087Zinc finger, C2H2
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAKYTKRLVV FLFLCLTNSL HLLTLSCSTS LQGSKDYAAS RALQHEQGNA HEVHCSRERS  60
RAAWKIIEEY LMPFVEKEHY QVSTGCRLHP DNDLYRDQEQ HKIHEDGNEW RCGYCRKSFY  120
EERYLNKHFD NRHYNLLNVS HSRCLADVCG ALHCDFVMDS ATRKTKCNPA AAARNKHLCE  180
SLANSCFPVN EGPSAHRLNE LFLHQFCDAH TCTGRQKPFP KGGKEGNKKG QPSTEADTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29633.m000894
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579499.11e-170uncharacterized protein LOC8260317
TrEMBLB9SLR40.0B9SLR4_RICCO; Nucleic acid binding protein, putative
STRINGXP_002526933.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32161319
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.15e-99C2H2-like zinc finger protein