PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29635.m000461
Common NameLOC8283435, RCOM_0538110
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 408aa    MW: 45500.7 Da    PI: 4.2257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29635.m000461genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-194695255
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  29635.m000461 46 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95
                   789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.69E-3145102No hitNo description
PfamPF008471.0E-134695IPR001471AP2/ERF domain
SMARTSM003808.9E-3646109IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-1946103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-2746102IPR001471AP2/ERF domain
PROSITE profilePS5103219.55946103IPR001471AP2/ERF domain
PRINTSPR003676.0E-84758IPR001471AP2/ERF domain
PRINTSPR003676.0E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGRKRKSSET VDQDKNSSEG TMAWDEMVKE AAEAAALGGV RRARKRFVGV RQRPSGRWVA  60
EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPCSPSSS TTPALPSKIT  120
NLLLQRLQAR NNSSASVTTS LPNNEQEKPE VEEYRTEATN FLDTQFTDFL NDPEDYYAAC  180
NDNINGAIDY MTSSLESCLT EKEDSTSGGK EPEFDYNCGD YDITQPCSGD NGNNSGGEAE  240
EDGEEEEEEE EGIDTGSLDF QFVDDHVESS CYYSAFDIAE EIEEPVEAEN YGDDPSMLRE  300
AMKRMRYERK FSASLYAFNG IPECLRLKIG SGNVMARERS AQLTNLRNAC NKKKEGRKAE  360
VEVTEKKQEE KLQRSSEMGS SDSSSSLSND GELSLWSSLD LPPICFVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1239102771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29635.m000461
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530017.10.0uncharacterized protein LOC8283435
TrEMBLB9SVJ80.0B9SVJ8_RICCO; Uncharacterized protein
STRINGXP_002530017.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11