PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29638.m000515
Common NameLOC8264862, RCOM_0544830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 864aa    MW: 95763.8 Da    PI: 7.4337
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29638.m000515genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-096616981954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  29638.m000515 661 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 698
                    564459******************************87 PP
2BELL99.42.9e-32516585372
           BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e q++kakLl l+eeV +rYkqy++q+q+v+ssFeavagl +a+pY+slAl+++Sr+Fr Lk ai++q+
  29638.m000515 516 PEYQQRKAKLLYLQEEVSRRYKQYHQQMQMVASSFEAVAGLSAATPYVSLALRTVSRNFRFLKLAISDQL 585
                    589****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-42418583IPR006563POX domain
PfamPF075262.1E-41423582IPR006563POX domain
PROSITE profilePS5007111.92639702IPR001356Homeobox domain
CDDcd000867.12E-11642703No hitNo description
SMARTSM003894.1E-8642706IPR001356Homeobox domain
SuperFamilySSF466891.24E-16644708IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-27645706IPR009057Homeodomain-like
PfamPF059204.1E-18659698IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 864 aa     Download sequence    Send to blast
MDASSFRSES HIAQQSRRDK LRVQSSSSVQ HLDDFPNNLE HLPVHSELTP DLVQVRNDRN  60
GSNIFYEPIT TVFPSAEMLH FASSSNVLPA QRDHHHHAML IGQEQPQPQP SRPIPGESTS  120
FTNMSHHSHP ISSNFNASPK ANTSDPQGCS SNWRNIDSHQ SYDWMVNYHA SGSSSSVGRE  180
SNQKPMFVGD VLSNSARANN ISTSTLYLKT SYNGFQDGHQ ASLANQSSEM PGQHSQKQYR  240
EMQIATSHIH PSFYQNSLQD VVTPDSIGGN SERILLPTYG NQSTALFFDN ANAWMNRPVE  300
NCHQWSSELG IITRKTDQEL RPIANDHNTQ GLSLSLSSNP PSRGNVTQFG EGYESEYFQS  360
KSGIFKEPHQ DSKLVRPNYS CAMSKPAIVS RSSGKSLNEM VGTSNYALRN PGPLGPFTGY  420
ATILKSSRFL KPAQELLDEF CDATGLKLMR PGEGSGRTSA EVNSLASLDV VISTADAETA  480
VKGNNNSGVS SSTFYSSNEV SGDMGVASSS CESYRPEYQQ RKAKLLYLQE EVSRRYKQYH  540
QQMQMVASSF EAVAGLSAAT PYVSLALRTV SRNFRFLKLA ISDQLKYVCK ALGEDLLSPN  600
SGASSSKGDT STPRTRYRDQ SFHRHKSGGA NVGIFEPQQH VWRPQRGLPE RSVAILRAWL  660
FEHFLHPYPT DTDKHMLATQ TGLSRNQVSN WFINARVRVW KPMVEEIHML ETKGLAETNR  720
SASNNDGKSK EGTSQPNHEQ ALNNLGASSM LNKQQLECSG SGSSAGSGEQ QLQTGQWSQD  780
KRSRLDQFQV PSNMDGSMMN FLPYQRSGID IGAGLGAVSL TLGLRHGVEN VQQQQQQHQH  840
PEVQQHEDQL RRQFGGQMIH DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15648706563Homeobox protein Meis2
3k2a_B3e-15648706563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29638.m000515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529426.10.0BEL1-like homeodomain protein 4
TrEMBLB9STV70.0B9STV7_RICCO; Bel1 homeotic protein, putative
STRINGXP_002529426.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.17e-89BEL1-like homeodomain 8