PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29638.m000530

Common Name

LOC8264877, RCOM_0545680

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

TCP

Protein Properties

Length: 227aa MW: 24570.5 Da PI: 8.2842

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29638.m000530	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	80.5	4.5e-25	32	145	3	109
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.........seceaesssssasnsssg. 88 k r++++h kv+gR+ RvR++a+caar+F+L++eLG+ ++++tieWLl a t s +a s+c+ +s + + 29638.m000530 32 INKPRSKDRHRKVEGRGTRVRIPADCAARIFQLTRELGHQTNGQTIEWLLHHVPSAHFPTTTAASATAtadsslhvpSSCSLDSLKR-------Sg 120 5799************************************************99998888877333332221222223332222222.......13 PP TCP 89 ....kaaksaakskksqksaasaln 109 ++ + + s k+ +s++ +ln 29638.m000530 121 glleNKDTHLHVSLKNADSSSGFLN 145 3432112222222222222222233 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	18.09	37	91	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.0E-20	37	135	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MASQAIPINP PPPPPFTNTT TNTKTQQLLP SINKPRSKDR HRKVEGRGTR VRIPADCAAR 60 IFQLTRELGH QTNGQTIEWL LHHVPSAHFP TTTAASATAT ADSSLHVPSS CSLDSLKRSG 120 GLLENKDTHL HVSLKNADSS SGFLNESKSS PLSTPTSSTS RIGYSSTGFL NDSTSLLLST 180 PTSTTETETP GIAMVEQKKE ELKGEFELFH GLDGNFPYIS FTSLLMQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	118	DSLKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29638.m000530

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002529441.1	1e-165	transcription factor PCF1
TrEMBL	B9STX2	1e-164	B9STX2_RICCO; Transcription factor, putative
STRING	XP_002529441.1	1e-165	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22597	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	8e-22	TCP family protein

Link Out ? help Back to Top
Phytozome	29638.m000530
Entrez Gene	8264877