PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29640.m000403
Common NameLOC8269014, RCOM_0546450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 228aa    MW: 25001.7 Da    PI: 8.7274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29640.m000403genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-203484155
            AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f++ae+Aa+a++ a++ l+g
  29640.m000403 34 PRYRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDTAARTLRG 84
                   68********.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.16E-313494No hitNo description
PfamPF008476.6E-133484IPR001471AP2/ERF domain
PROSITE profilePS5103223.6173592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-323592IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-223594IPR016177DNA-binding domain
SMARTSM003801.1E-363598IPR001471AP2/ERF domain
PRINTSPR003678.8E-113647IPR001471AP2/ERF domain
PRINTSPR003678.8E-115874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRRGRGAAVA AKQEAAQPNG SAPAPQNTPN GKEPRYRGVR KRPWGRFAAE IRDPWKKTRV  60
WLGTFDSAED AARAYDTAAR TLRGPKAKTN FPINASQLSP FAYQNPPDPF VDYHHRVFTT  120
NNGYESHPVN PQRPTSSSLS STVESFSGPR PPPTTVGSQK RHHPRTPPVV PEDCHSDCDS  180
SSSVVDDGDI ASSSSLCYRK PLPFDLNFPP LDQVDFAGDD LQCTALCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-213293264ATERF1
3gcc_A8e-213293264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29640.m000403
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531192.11e-168ethylene-responsive transcription factor 3
SwissprotO803398e-59ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLB9SYX31e-167B9SYX3_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002531192.11e-168(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22633484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-33ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]