PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29643.m000337
Common NameLOC8279899, RCOM_0550250
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NF-YC
Protein Properties Length: 232aa    MW: 26520.3 Da    PI: 10.5179
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29643.m000337genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.62.8e-13117207999
          NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                    +i+++++    ++P+arik+i+k+++  ++++ ++  l+ ka e+f+ ++   ++  a   + ++l    ++++v+    fdfl d vp++
  29643.m000337 117 DIGESENGTMCSFPMARIKRIIKTEDIGSKLTQDVVFLVNKATEMFLEQFCEEAYECAVREENESLAYKHLSSVVSGQRRFDFLSDFVPKQ 207
                    566677777889*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.2E-16127208IPR009072Histone-fold
PfamPF008085.1E-15128191IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.9E-22129206IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MASTKISKKE GEKKKKKKNA KESPGKTRKT PIKRTPSKLP KKQEDKKNNS NKTPSGKVKE  60
SPEDSIISFS SSDSLQEVQE AVTKKELAKN SKPKNQSSNN RSPKIEKSKK RKIKEDDIGE  120
SENGTMCSFP MARIKRIIKT EDIGSKLTQD VVFLVNKATE MFLEQFCEEA YECAVREENE  180
SLAYKHLSSV VSGQRRFDFL SDFVPKQLKA KEALRRRTLV ETVQRQEQYL SR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102111PKIEKSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29643.m000337
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532613.21e-166uncharacterized protein LOC8279899
TrEMBLB9T2Z41e-165B9T2Z4_RICCO; DNA polymerase epsilon subunit, putative
STRINGXP_002532613.11e-166(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-31nuclear factor Y, subunit C10