PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001062
Common NameLOC8264185, RCOM_0553190
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family BES1
Protein Properties Length: 317aa    MW: 34472.5 Da    PI: 9.3018
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001062genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822220.24.4e-6851491149
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqs 96 
                    g+sgr ptwkErEnnkrRERrRRaiaakiy+GLRaqGn+klpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  +e +g+ +++s +ss+q 
  29646.m001062   5 GSSGRLPTWKERENNKRRERRRRAIAAKIYSGLRAQGNFKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKPP-PTELTGTPTNISACSSIQP 99 
                    689*************************************************************************.9****************** PP

         DUF822  97 slkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149
                    s++ss+++spv+sy+asp+sssfpsp++++ +++   + llp+l++ ++++++
  29646.m001062 100 SPQSSNFPSPVPSYHASPSSSSFPSPTRFEGNPS---TYLLPFLRNIASIPAN 149
                    ******************************9988...5999999999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.3E-646129IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MTAGGSSGRL PTWKERENNK RRERRRRAIA AKIYSGLRAQ GNFKLPKHCD NNEVLKALCA  60
EAGWIVEEDG TTYRKGCKPP PTELTGTPTN ISACSSIQPS PQSSNFPSPV PSYHASPSSS  120
SFPSPTRFEG NPSTYLLPFL RNIASIPANL PPLRISNSAP VTPPLSSPTN RNSKRKADWE  180
SFSNGSLKSF CHPLFALSAP SSPTRRQHLT PATIPECDES DASTVDSGRW VNFQAVAPQV  240
APPSPTFNLV KSVSQQSAFQ DRVDGHGGLG WGPAAERGRV SEFEFENARV KPWEGERIHE  300
IGMEDLELTL GSAKAHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-29987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-29987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-29987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-29987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525100.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-120BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLB9SGI10.0B9SGI1_RICCO; BRASSINAZOLE-RESISTANT 1 protein, putative
STRINGXP_002525100.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127534105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.27e-91BES1 family protein