PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29646.m001066
Common NameLOC8264189, RCOM_0553230
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 209aa    MW: 24163.6 Da    PI: 8.4632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29646.m001066genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.4e-1856109457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    ++++++eq++ Le  F ++r++  e++ +LA++lgL+ rqV vWFqNr a++k+
  29646.m001066  56 KRKLSQEQVNLLEMNFSNERKLACERKDKLASELGLDPRQVAVWFQNRTARWKH 109
                    5689************************************************95 PP
2HD-ZIP_I/II112.52.8e-3655145292
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    kkr+ls+eqv+lLE++F++e+kL  erK +la+eLgl+prqvavWFqnr AR+k k+lE++y++Lk+a+++++ e++rLe+ev +L+e+l 
  29646.m001066  55 KKRKLSQEQVNLLEMNFSNERKLACERKDKLASELGLDPRQVAVWFQNRTARWKHKKLEEEYTKLKTAHETIVLEKCRLESEVLKLNEQLC 145
                    9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1553117IPR009057Homeodomain-like
SMARTSM003896.2E-1453114IPR001356Homeobox domain
CDDcd000861.00E-1355111No hitNo description
PROSITE profilePS5007115.20855110IPR001356Homeobox domain
PfamPF000462.0E-1556109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1757117IPR009057Homeodomain-like
PRINTSPR000317.3E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000317.3E-590106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMTATSNQKV EDHTVLLSQL YPGVYTQMVP QQGEAKPRRR RKRNKGGETG VTGVKKRKLS  60
QEQVNLLEMN FSNERKLACE RKDKLASELG LDPRQVAVWF QNRTARWKHK KLEEEYTKLK  120
TAHETIVLEK CRLESEVLKL NEQLCEANKE IQRLADRVDG VSSNNSSSMS MEALDPPFLG  180
EFGMEGYGDI FHIPENNYIH GMEWMNLFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13856RRRKRNKGGETGVTGVKKR
24057RKRNKGGETGVTGVKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29646.m001066
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525104.11e-156homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU702e-76ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLB9SGI51e-155B9SGI5_RICCO; Homeobox protein, putative
STRINGXP_002525104.11e-156(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.13e-53homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]