PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29647.m002009
Common NameLOC8287166, RCOM_0555400
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 478aa    MW: 50977.2 Da    PI: 8.5864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29647.m002009genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-115278127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++ + C +++rtG+C yG+rC+++H++
  29647.m002009 52 PGVPDCVYYMRTGFCGYGNRCRYNHPR 78
                   57899********************96 PP
2zf-CCCH375.6e-1299123327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C f+++tGtCk+G++CkF+H++
  29647.m002009  99 EPSCEFYLKTGTCKFGASCKFHHPK 123
                    577********************96 PP
3zf-CCCH36.49e-12144169227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ +C+++++tG+Ck+G +CkF+H++
  29647.m002009 144 GENECSYYLKTGQCKFGITCKFHHPQ 169
                    6789********************97 PP
4zf-CCCH36.58.3e-12303329127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++++rtG Ck+G++C+++H++
  29647.m002009 303 PGEPECQYYLRTGDCKFGSSCRYHHPR 329
                    5799*********************96 PP
5zf-CCCH28.72.3e-09354375627
                    -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                    C f++r+G+Ck+G++CkF H++
  29647.m002009 354 CTFYLRNGHCKFGSTCKFDHPM 375
                    ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-75178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3145179IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-85378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45778IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-596123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.26796124IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-999123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5100123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4102123IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342142170IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9144169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5146170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4148168IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-6302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817302330IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6306331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5308329IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544348376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6351379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4353376IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-7354375IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MDLYGRSQAR NGLQSGQQPE WSSGGAETGL EESMWRLGLN NSGGGESYPE RPGVPDCVYY  60
MRTGFCGYGN RCRYNHPRNR AAVEAAVRAT GEYPERIGEP SCEFYLKTGT CKFGASCKFH  120
HPKHGGGSLS HVPLNTHGYP LRPGENECSY YLKTGQCKFG ITCKFHHPQP AGSSLPESAP  180
QFYQPVQSPS IPIPDQYGGA SASLRVRPPL LPGSYVQGAY GPVLFSPGVV PIPGWSPYSA  240
PVSPVLSPSA QPAVGATSLY GVTQLSSSTP ALAGPYPSPS SAAAAAAAPL SGTQKEQTFP  300
ERPGEPECQY YLRTGDCKFG SSCRYHHPRD RVVPRTNCVL SPLGLPLRPG AQHCTFYLRN  360
GHCKFGSTCK FDHPMETMRY SPSASSLIDM PVAPYPVGSL LATLAPSSSS SELIGGTKID  420
PYLSRIPSSG NTSSSGVGLM FSQTGSVPLS ELQLPSQNPV PLTSSRSTRQ GAEVRRSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29647.m002009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520668.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9S3U90.0B9S3U9_RICCO; Nucleic acid binding protein, putative
STRINGXP_002520668.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein