PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29648.m001920
Common NameRCOM_0559430
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 346aa    MW: 39548.3 Da    PI: 10.1059
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29648.m001920genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-1864107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
    29648.m001920  64 RRPFSEEEEERLLAAHRTHGNK-WALIARLFP-GRTDNAVKNHWHV 107
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-2343114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-94571IPR009057Homeodomain-like
PROSITE profilePS5129427.51259113IPR017930Myb domain
SMARTSM007175.2E-1663111IPR001005SANT/Myb domain
PfamPF002491.1E-1564106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-1872107IPR009057Homeodomain-like
CDDcd001677.02E-875106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEIKEERKKK RKRKTVKNKL MCVAMAMAYN KNKKALTGLE LVALHTGKSC RLRWFNQLDP  60
RINRRPFSEE EEERLLAAHR THGNKWALIA RLFPGRTDNA VKNHWHVIMA RKQREHSKIS  120
GKRSYQEGGL SDSNTITTTN DFHLRKSRSQ DLFVSSSSRI GFENSTARFL EFRDLNTDRL  180
LSVVSSSSTS SPNFWTFASS TKTAPFNKNN ASSADHLSTE EGRDNYFNTY SFCTTDQSSK  240
FSDQSIYNRC YPNSSSVYGN YKNPAVFGLP NYRRVIPSPF GCLKIGDHDF ENHGTIKKDV  300
LKNFCENSST LITNMSNQEE QGGDHHESIR QKEVPFIDFL GVGISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-194711242107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713KKKRKRK
2813KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29648.m001920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707902e-63AB970790.1 Populus tremula x Populus tremuloides PtxtMYB158 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575349.10.0transcription factor MYB44
TrEMBLB9S2N10.0B9S2N1_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002520250.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-37myb domain protein 52