PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29648.m001973
Common NameRCOM_0561570
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 2030aa    MW: 222894 Da    PI: 8.8853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29648.m001973genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-0519051926627
                     -SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                     C+++ +tG C+ G++Ck +H++
  29648.m001973 1905 CPTYEATGSCPEGSKCKLHHPK 1926
                     *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.03117951823IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.07517951824IPR000571Zinc finger, CCCH-type
SMARTSM003561518241848IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-418501875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5418501876IPR000571Zinc finger, CCCH-type
SMARTSM003560.5518771903IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.66218771898IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.13118991927IPR000571Zinc finger, CCCH-type
SMARTSM003560.5119041926IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2030 aa     Download sequence    Send to blast
MENRSGSYFH QTRYGQSNHH HHVIPNSYVH HHNHTHHQSN FQPAPQQFRP PQSQLPPPHL  60
PPHPLPLPPY QQQQQHPFNN PRFPFNSTRS HPDALNFPQS PPPSRLPSDF IGGDFQSRAL  120
QPGSYHQHPL DPDSYRRQLD HHHHHHQPMS PINPRIIEEH KQQQRGDLSF GSNSRDFRIA  180
ASNNQINHTE EGIENQRWVR RGREIIRGVH DSVISDSDGN RKREHYRSSR EFNVESGQGS  240
SREGSHEFSR TTPRKQLPKK SALLRIQKPT IQKFRIRDDD RGHHYSAYFD HTNYSSSFRG  300
IKDKDQNLSH LDRETGDQVR EGSTMELDVS FKSNSLVAKA IVTPSADVSN SNLPPRNGKL  360
RNKDKNSSSS SPSKANGATI KLDNVVSVAK NTSSSDKDLK QSKEEVKVSV SSGTKVSIGK  420
NKGESPTKGT VSNKGGANVV SGKASSLKVL KKKLVKRPVK KAINPNLYSS SSKLTKKSDG  480
PIIKDSFVHA QPAYFQPDKE AAITSVNVVD SQPCTNETNV MPEKCRVEGC AEAMVSENGA  540
SAGFGRLCLP NIKRKRSHST SPLGSSSLEE TKINENMVND DSTNYSHAIL NTDKDYTKLL  600
NETTGSDIGA VEDAAKQLCQ SGDSLLLENN AANGSPKYLL SAEGNADCGC SNSVKTKIHE  660
GPAGSSDMIL GYESDNGLIN LTERTTVFDN GITDGGCKQP CTNEVSPSIE DDIVDQFVNG  720
SSQIWQGTSG EMTNGIVARS ASPSIEGVGT TFDSNNGNHV SREISLSSNG ASISKQPSPD  780
RVGISFENVP VRGSLSRMVS MGGREEDDTL NIDKSDIKVK SSELDFSKSE VNDVYAEPVN  840
MVTSAWVDTT LRLSFKDPTP TEFIVSGDEH RDVDQRPHTD GANVLTQRSS MDVSEANISV  900
SSTTSVCPNA GLIQNQKKRK ITGSQLEMYC PMTSDVVEGP IITGISVSTA ELPCNSGCSS  960
DLPSVQKETT ASLNCSRVRY DSTAAPFRDV FEKDGLRCIS SCSTAEELSV PKVKSVCPTG  1020
FEGEKIAGTT PVMAGISHQN NSIHAESGEG EKMDVDAVEE QLIVDSGTSQ CQCPSEVQSL  1080
NSDERMPVVN VEDENCLDAK NGLPSASNNL FSLRDCNGTS TTDTSGEAMV LVPDTLPNMD  1140
YQETLPDAPS ILQSSLSIKQ AGGNDEILLG MSATQGGSGI SAVTSGSLIT EDHAVENANS  1200
FGGKATLPSQ DTKSSTQTLN AMSKEISGRK SHHNIAAYPG RSSFVFLAST STAPSNHISK  1260
PRTWHRTDSS FAPALPGNKV FSSTVPTKCQ LPKKVTKFHN TSYIRKGNSL VRKPTLVAAQ  1320
PLGSHGLSSS AYWLNSSGKY EVKKNTDTRT GVADPPNFVK SGVGASFERP RTPPLPSSTK  1380
ISNHPTNSMG DCLSSPLVER LHICAAEAAS DPVTSTESND VLKSSEDTVK VSEKHMFQTG  1440
QINNLDCETE QNDGNAVSSN AKSIKYVKRK SNQLIATSNP CSLSMKNSHS TAALPSDGYY  1500
KRRKNQLIRT SVENHEKPTA SMPDESVNTE GQALHNITSG RSLTKRRSRK VVAKTRKPSK  1560
FSSVWTLHSA QSLKDDSHSL HSQKVLPQLL PWKRATSWRS FIPSSAAISI NGSSSLISRK  1620
LLLLRKRDTV YTRSKHGYSL RKSKVLSVGG SSLKWSKSIE RQSKKANEEA TLAVAEAERK  1680
KRERFGASHV DTGTKNRNSS SRERIFRIGS VRYKMDSSRR TLQRISDDES SHLAALQTEK  1740
DAKRYYVPRR LVIGKDEYVR IGNGNQLVRD PKKRTRILAS EKVRWSLHTA RSRLARKRKY  1800
CQFFTRFGKC NKDDGKCPYI HDSSKIAVCT KFLNGLCFNP VCKLTHKVIP ERMPDCSYFL  1860
QGLCSNENCP YRHVHVNPNA STCEGFLRGY CNDGNECQKK HSYVCPTYEA TGSCPEGSKC  1920
KLHHPKIRIK GRKSKQLREK KNSRGRYFGS MHVNISEPGT AVSEKHSVQE NDNFCFEGSI  1980
SDYISLDVSD EAEENSNPAD KQTSLCDSDA LDLELVDLDE LIKPIRIMNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C6e-201801193641178Cleavage and polyadenylation specificity factor subunit 4
6fuw_C6e-201801193641178Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1552557KRKRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29648.m001973
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-31LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-31LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575378.10.0uncharacterized protein At1g21580 isoform X1
TrEMBLB9S2T40.0B9S2T4_RICCO; Uncharacterized protein
STRINGXP_002520303.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61031010