PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29648.m002012

Common Name

RCOM_0563350

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 369aa MW: 42251.1 Da PI: 9.7133

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29648.m002012	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.1	6.8e-53	85	209	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + 29648.m002012 85 LPPGFRFHPTDEELVMHYLCRKCASQQIAV-PIIAEIDLYKYDPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGQ-- 177 79***********************999.88***********6666689*********************************98.. PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+apkgekt+W+mheyrl 29648.m002012 178 PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 209 789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-63	79	235	IPR003441	NAC domain
PROSITE profile	PS51005	60.827	85	235	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	86	209	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MWAIDTHAPP LERRTRVPAA VIEEKTRKKG KKRYRPRFQA PSPQRERKQE SESIYSCSRS 60 RISRVEEKGK QVKGKKNDMA AVLELPPGFR FHPTDEELVM HYLCRKCASQ QIAVPIIAEI 120 DLYKYDPWDL PGMALYGEKE WYFFSPRDRK YPNGSRPNRA AGSGYWKATG ADKPIGQPKP 180 VGIKKALVFY AGKAPKGEKT NWIMHEYRLA DVDRSARKKN SLRLDDWVLC RIYNKKGTIE 240 KQGQLSNKKI INYSPSNIIE DKKPEIMAPP PAPSSGTGTA NDFVYFESSD SVPKLHTDSS 300 CSEHVVSPEF TCEVQSEPKW KDWGSNVNAL DFPFNYMDGS MDSAFASQFQ NNNQMSPLQD 360 MFMYLQKPF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MWAIDTHAPP LERRTRVPAA VIEEKTRKKG KKRYRPRFQA PSPQRERKQE SESIYSCSRS  60
RISRVEEKGK QVKGKKNDMA AVLELPPGFR FHPTDEELVM HYLCRKCASQ QIAVPIIAEI  120
DLYKYDPWDL PGMALYGEKE WYFFSPRDRK YPNGSRPNRA AGSGYWKATG ADKPIGQPKP  180
VGIKKALVFY AGKAPKGEKT NWIMHEYRLA DVDRSARKKN SLRLDDWVLC RIYNKKGTIE  240
KQGQLSNKKI INYSPSNIIE DKKPEIMAPP PAPSSGTGTA NDFVYFESSD SVPKLHTDSS  300
CSEHVVSPEF TCEVQSEPKW KDWGSNVNAL DFPFNYMDGS MDSAFASQFQ NNNQMSPLQD  360
MFMYLQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-82	75	241	5	174	Stress-induced transcription factor NAC1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00121	DAP	Transfer from AT1G01720	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29648.m002012

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015575373.1	0.0	NAC domain-containing protein 2
Swissprot	Q39013	1e-155	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	B9S2X2	0.0	B9S2X2_RICCO; NAC domain-containing protein, putative
STRING	XP_002520341.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1258	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-156	NAC family protein

Link Out ? help Back to Top
Phytozome	29648.m002012

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]