PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29653.m000299
Common NameLOC8263889, RCOM_0569640
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18619.3 Da    PI: 10.3441
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29653.m000299genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.2e-143781446
                   -SHHHHHHHHHHHHHHHHHHHHHHHHH..HT-EEEEEEE-TTSEE CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvL..Cdaevaviifsstgkl 46
                   +nk+   vtfskRr+g++KKA E + L   +aeva+i fs++g+ 
  29653.m000299 37 DNKTGLIVTFSKRRTGLFKKAMEFCNLdgGGAEVALITFSPSGRP 81
                   6888889********************6668***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-192587IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.7272588IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-1926102IPR002100Transcription factor, MADS-box
PfamPF003191.2E-153884IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MNADADDNPS MWAVHASKRR GGGGNGRRKI EIKKIQDNKT GLIVTFSKRR TGLFKKAMEF  60
CNLDGGGAEV ALITFSPSGR PFSFGKPSPD SVVLRYLTTP QRVKDTTPPK PQKEEEGEGF  120
LWEKGIKNLD AEEVEEYKDA LAELKKKLVF RIAEIRVRSA NTRNFF
Cis-element ? help Back to Top
SourceLink
PlantRegMap29653.m000299
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002530792.11e-119agamous-like MADS-box protein AGL62
TrEMBLB9SXS31e-118B9SXS3_RICCO; Mads box protein, putative
STRINGXP_002530792.11e-119(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-18AGAMOUS-like 61