PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29657.m000463
Common NameLOC8264288, RCOM_0574260
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 131aa    MW: 15310.6 Da    PI: 10.0119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29657.m000463genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.5e-1931251108
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyat.gkrknra...tksgyWkat 86 
                    lppGfrF+Ptd el ++yL kk++g+ l++++  ++ +d+y   +Pw +  k   +  +e++++yfFsk +kk+ +  kr  r     ++g+W+  
  29657.m000463   3 LPPGFRFDPTDTELFSHYLYKKINGTLLPMQKLyVTVCDLYGQnDPWIIWdKfggNSLTEKDDLYFFSKLKKKTDKsCKRFDRNvgvDRKGTWSGE 98 
                    79***************************999878888**97549****733444333356699*****99998763567778523356******* PP

            NAM  87 gkdkevlsk.....kgelvglkktLvf 108
                      dk++  k     +++  glkk + +
  29657.m000463  99 KLDKTIQFKlssshNRTIQGLKKRFSY 125
                    ******998877766667999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-182125IPR003441NAC domain
PROSITE profilePS5100521.6313131IPR003441NAC domain
PfamPF023655.4E-144126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MALPPGFRFD PTDTELFSHY LYKKINGTLL PMQKLYVTVC DLYGQNDPWI IWDKFGGNSL  60
TEKDDLYFFS KLKKKTDKSC KRFDRNVGVD RKGTWSGEKL DKTIQFKLSS SHNRTIQGLK  120
KRFSYENPTV P
Cis-element ? help Back to Top
SourceLink
PlantRegMap29657.m000463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529748.12e-93NAC domain-containing protein 104
TrEMBLB9SUS95e-92B9SUS9_RICCO; Uncharacterized protein
STRINGXP_002529748.18e-93(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-10NAC domain containing protein 20