PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29657.m000465
Common NameLOC8264289, RCOM_0574280
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 390aa    MW: 44572.1 Da    PI: 6.1155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29657.m000465genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.64.2e-182353751128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 
                    lppG+ FhP+d+ lv++yL +kv++ kl++ +   ++ +d+y   ePw+L  ++++    ++ ++yfF++ + k  +  r  r + ++g+W+   +
  29657.m000465 235 LPPGYIFHPSDKVLVSYYLFHKVKHMKLSEVDNrtVPVCDLYGDkEPWELWDEFAQnllfTDGDLYFFTQLKGKP-RIPRILRtVGNKGTWQGESS 329
                    79************************9655443359999*997549****743322244477799****998875.56788885777*****8866 PP

            NAM  89 dkevlskkgel........vglkktLvfykgrapkgektdWvmheyrl 128
                     ke+  +++ +          +kk + + + +++  ++ +W+mhe++l
  29657.m000465 330 -KEIAFRGDVDpgdkvwsiRAIKKRFRYKS-QNKCNQHRRWIMHEFSL 375
                    .666665333345566777899*****985.55555899*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-21231390IPR003441NAC domain
PROSITE profilePS5100524.944235390IPR003441NAC domain
PfamPF023654.7E-15236375IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNLDLNLTAQ ESFVGLAFQD SAHKATGFNS FDQLVDDRGK GDSSACTNGV ELSKRKRHTV  60
EEKANDSIVN LDLDLSLEML NSEPVEKIKE HDVPREAMKP VNQESSGKKC SIARSVAERF  120
AHPEQQHKEG IHTIEEKGKG KIDDGNTAIL DLDLDLSVSL EKLNSEGVEK NIEIKEVDVP  180
REATEPVNKE SSRKQDFVAE SCKHPEEQQQ AGTRRELGEV DKELDDSQIS FWSTLPPGYI  240
FHPSDKVLVS YYLFHKVKHM KLSEVDNRTV PVCDLYGDKE PWELWDEFAQ NLLFTDGDLY  300
FFTQLKGKPR IPRILRTVGN KGTWQGESSK EIAFRGDVDP GDKVWSIRAI KKRFRYKSQN  360
KCNQHRRWIM HEFSLPSIST DWVLCRLVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29657.m000465
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529750.10.0uncharacterized protein LOC8264289
TrEMBLB9SUT10.0B9SUT1_RICCO; Uncharacterized protein
STRINGXP_002529750.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.16e-13NAC domain containing protein 96