PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29657.m000471
Common NameLOC8264295, RCOM_0574840
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 291aa    MW: 32210.1 Da    PI: 4.7113
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29657.m000471genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.52.8e-1581261109
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                    lp+G+rF+Pt+ elv +yL kk+++++ l++e++ +++ ++y+  ePw+L +      +++++++e+y F++ +kk +   r  r + + g+W+  
  29657.m000471   8 LPVGYRFSPTEGELVGHYLFKKLKSSSlLPFETIlVADSNLYDKdEPWQLWEksgarcSFNSDDHEIYLFTPLKKKRS---RILRsVGDGGTWHGV 100
                    799***********************97566555588889996559****633677776777899********99864...7777466799***99 PP

            NAM  87 gkdkevlsk...kgelvglkktLvfy 109
                     + k+v+++    g  v  +++L + 
  29657.m000471 101 DSGKPVKARiapAGFFVVSRRILLLM 126
                    99999998655544456677776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-166129IPR003441NAC domain
PROSITE profilePS5100519.2188162IPR003441NAC domain
PfamPF023652.2E-99108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MQQSKDQLPV GYRFSPTEGE LVGHYLFKKL KSSSLLPFET ILVADSNLYD KDEPWQLWEK  60
SGARCSFNSD DHEIYLFTPL KKKRSRILRS VGDGGTWHGV DSGKPVKARI APAGFFVVSR  120
RILLLMIKKG ARLRKGFMKN RKIVNSDGEC DKRLMIADVA IAEQPALSDF SFNGASVLVV  180
AEQGNANTAG VDFNSEMVPS DNGLQAETIV AEGEVLPEVN SNEGDQLLGH EIVEWAHNSS  240
SMINTDLTFS NGEQSGDDQS FYADLESLNQ SDSFLAYLLE DDDMPSKFGS R
Cis-element ? help Back to Top
SourceLink
PlantRegMap29657.m000471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529756.10.0uncharacterized protein LOC8264295
TrEMBLB9SUT70.0B9SUT7_RICCO; Uncharacterized protein
STRINGXP_002529756.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-09NAC domain containing protein 25