PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29657.m000474
Common NameLOC8264298, RCOM_0574870
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 109aa    MW: 12376.1 Da    PI: 9.0343
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29657.m000474genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.51.4e-158107193
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykv.ePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                    lp+G+rF+Pt+ elv +yL kk++g++ l++e++ +++ ++y+  ePw+L +      +++++++e+y F++ +kk +   r  r + + g+W+  
  29657.m000474   8 LPVGYRFSPTEGELVGHYLFKKLKGSSlLPFETMlVADSNLYDKdEPWQLWEksgarcSFNSDDHEIYLFTPLKKKRS---RILRsVGDGGTWHGV 100
                    79*************************8566555689999996659****633677776777899********99864...7777466799***88 PP

            NAM  87 gkdkevl 93 
                     + k+v+
  29657.m000474 101 DSGKPVK 107
                    8877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-176107IPR003441NAC domain
PROSITE profilePS5100520.6778109IPR003441NAC domain
PfamPF023654.9E-109104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MQQSKDQLPV GYRFSPTEGE LVGHYLFKKL KGSSLLPFET MLVADSNLYD KDEPWQLWEK  60
SGARCSFNSD DHEIYLFTPL KKKRSRILRS VGDGGTWHGV DSGKPVKLG
Cis-element ? help Back to Top
SourceLink
PlantRegMap29657.m000474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529759.13e-76NAC transcription factor NAM-1
TrEMBLB9SUU06e-75B9SUU0_RICCO; Uncharacterized protein
STRINGXP_002529759.11e-75(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-11NAC domain containing protein 25