PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29657.m000483
Common NameLOC8264307, RCOM_0574960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 316aa    MW: 35605.6 Da    PI: 5.0979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29657.m000483genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.41.4e-2381461128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykv.ePwdLpkkvka....eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                    lp G+rF+Ptdeelv  yL kk+++ +  ++e++ ++ +d+y   ePw+L  ++++    ++ ++yfF++ +kk ++++r +r + +g+W+   k 
  29657.m000483   8 LPTGCRFSPTDEELVAMYLFKKTKNLNlSDVENMiVPVCDLYGDkEPWELWDQFSQnqlfTNGDLYFFTELKKK-PKSSRISRRVGKGTWHGENKR 102
                    699**********************99545555536666**97549****743333123334488999998776.6789999999**********9 PP

            NAM  90 kevlsk.......kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                    ++v +        +  l    +kk + +   +++++++++W++he++l
  29657.m000483 103 EPVNVLldvgsakQ--LmiQATKKRFNYR--NQNSAHHCRWILHEFSL 146
                    99988777765322..1447788888887..6667779********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-236159IPR003441NAC domain
PROSITE profilePS5100526.9068161IPR003441NAC domain
PfamPF023651.6E-169146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDQFLATLPT GCRFSPTDEE LVAMYLFKKT KNLNLSDVEN MIVPVCDLYG DKEPWELWDQ  60
FSQNQLFTNG DLYFFTELKK KPKSSRISRR VGKGTWHGEN KREPVNVLLD VGSAKQLMIQ  120
ATKKRFNYRN QNSAHHCRWI LHEFSLDNVS TNWVLCRLRN NHVSDSVNSV LVLERVSSNG  180
KNAEADEQCP NSEIVPFEKR LKTSDRSTVL VAGQESDSNK ACIVVAEQDN GFVGGRDLPE  240
YGSIANAGYE FENDSTYSEL SMICYGSMVS SVSNDELFGN VERFNQGNVA SADIQTSSQR  300
ADSDFASQTG QNGMHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17783LKKKPKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap29657.m000483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529768.10.0NAC domain-containing protein 102
TrEMBLB9SUU90.0B9SUU9_RICCO; Uncharacterized protein
STRINGXP_002529768.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.18e-14NAC family protein