PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29661.m000902

Common Name

LOC8283348, RCOM_0578520

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 246aa MW: 26988.7 Da PI: 8.6625

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29661.m000902	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.4	1.7e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ 29661.m000902 2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAA 97 6*********************************************************************************************** PP DUF260 92 aelall 97 +e++l+ 29661.m000902 98 VETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.703	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLAGSSPS 120 PASDETSEAE VTCTDMWKLQ DPNPHSRFSN SRSKSSPKRK RINNNETLTI NKQQLPKPLY 180 LPSNDLDLRL TPSFSPKNSP RKPELRRPGT PSMNSEESVT TTCFDSGFGD QYGNGGGDRK 240 LLNLFV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29661.m000902

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525255.1	0.0	LOB domain-containing protein 37
Swissprot	Q9SN23	1e-92	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	B9SGY6	0.0	B9SGY6_RICCO; LOB domain-containing protein, putative
STRING	XP_002525255.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	6e-88	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	29661.m000902
Entrez Gene	8283348