PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29661.m000908
Common NameLOC8283354, RCOM_0579380
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 206aa    MW: 22776.2 Da    PI: 8.9938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29661.m000908genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006130151223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C++C+++F++   L  H r+H
  29661.m000908 130 ECSICHRTFPSGQALGGHKRRH 151
                    5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-77094No hitNo description
PfamPF139123.2E-137196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3497299IPR007087Zinc finger, C2H2
SMARTSM003550.197294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807495IPR007087Zinc finger, C2H2
SuperFamilySSF576678.86E-7124151No hitNo description
PfamPF139127.4E-13129153IPR007087Zinc finger, C2H2
SMARTSM003550.46129151IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767129151IPR007087Zinc finger, C2H2
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MALEALNSQS PLLHSNHDLD LHSAESWAKR RQTKRPRFEN SPTEEEYLAL CLLMLAKDTT  60
TIQDDLDHNR RYECKVCYRT FRSYQALGGH KASHHRKPIA TDNNQSVTTS SSIATSKTAN  120
SVSLSGKTRE CSICHRTFPS GQALGGHKRR HYDGGSGGGV GGSSSDGDNK GLKDVNSRNT  180
TTISQRNFDL NLPAMPEFSF IGVDRH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29661.m000908
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525261.11e-154zinc finger protein AZF1
SwissprotQ9SSW12e-41AZF1_ARATH; Zinc finger protein AZF1
TrEMBLB9SGZ21e-152B9SGZ2_RICCO; Zinc finger protein, putative
STRINGXP_002525261.11e-153(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.17e-38C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]