PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29662.m000460
Common NameLOC8289112, RCOM_0582950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 197aa    MW: 22576.9 Da    PI: 8.4166
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29662.m000460genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1881135256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ ++tk+q   Le+ F+ +++++  ++  LA++l+Lt rqV vWFqNrRa+ k
  29662.m000460  81 RKKLRLTKDQSALLEDSFKLHNTLNPVQKHALAHQLSLTPRQVEVWFQNRRARTK 135
                    678899***********************************************98 PP
2HD-ZIP_I/II120.77.4e-3981169190
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    +kk+rl+k+q++lLE+sF+ +++L+p +K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eL+ +
  29662.m000460  81 RKKLRLTKDQSALLEDSFKLHNTLNPVQKHALAHQLSLTPRQVEVWFQNRRARTKLKQTEEDCELLKKWCESLSDENKRLKKELQELK-T 169
                    69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-1872138IPR009057Homeodomain-like
PROSITE profilePS5007116.24477137IPR001356Homeobox domain
SMARTSM003898.5E-1679141IPR001356Homeobox domain
PfamPF000461.5E-1581135IPR001356Homeobox domain
CDDcd000863.57E-1481138No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1781135IPR009057Homeodomain-like
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
SMARTSM003405.4E-14137177IPR003106Leucine zipper, homeobox-associated
PfamPF021833.1E-9137170IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGEEDGATGL ALALSIGDHC IPKVQQNHKN KSAVTLDLSF TLCPKQEEEE EETFKLVHEA  60
EHASNKRIDF FSCNGTKNIC RKKLRLTKDQ SALLEDSFKL HNTLNPVQKH ALAHQLSLTP  120
RQVEVWFQNR RARTKLKQTE EDCELLKKWC ESLSDENKRL KKELQELKTL KPFCLHLPLC  180
STSKKAAPSE RVPPLHQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29662.m000460
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527693.11e-142homeobox-leucine zipper protein HAT9
SwissprotP466046e-46HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLB9SNX41e-141B9SNX4_RICCO; Homeobox protein, putative
STRINGXP_002527693.11e-142(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-37HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]