PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29668.m000320
Common NameLOC8265309, RCOM_0590490
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LSD
Protein Properties Length: 147aa    MW: 15329.8 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29668.m000320genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.69.8e-143054125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr+lL YP+GA+sV+Ca+C++V
  29668.m000320 30 CSGCRNLLLYPAGATSVCCAVCNAV 54
                   ************************9 PP
2zf-LSD146.56e-156993125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggC+tlL+Y rGA+sV+C++C+t+
  29668.m000320 69 CGGCHTLLMYIRGATSVQCSCCHTI 93
                   ***********************97 PP
3zf-LSD141.32.5e-13107131125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Cr lL+Y +GA+sV+C++C++V
  29668.m000320 107 CGNCRMLLMYQYGARSVKCSVCNFV 131
                    ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.102.4E-419128No hitNo description
TIGRFAMsTIGR010534.5E-132757IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.7E-530128IPR011031Multihaem cytochrome
PfamPF069436.2E-113054IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-146695IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-126993IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.3E-12104134IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-12107131IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPYTQPAS ANGAQSQLVC SGCRNLLLYP AGATSVCCAV CNAVTAVPPP  60
GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTINLAMEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCSVCNF VTAVGASTST TEQKFNS
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29668.m000320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528249.11e-102protein LOL1
SwissprotQ93ZB12e-79LOL1_ARATH; Protein LOL1
TrEMBLB9SQI01e-101B9SQI0_RICCO; Uncharacterized protein
STRINGXP_002528249.11e-102(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.39e-68lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]