PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29671.m000294
Common NameLOC8262541, RCOM_0594590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-PHD
Protein Properties Length: 732aa    MW: 82651.9 Da    PI: 9.9255
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29671.m000294genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.47.4e-11507552853
                    -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     ++ +e L ++F++n  ps++ +e L+k+lgL+  +V+ WF+N R+
  29671.m000294 507 PPSAVEKLRQVFAENELPSRTIKENLSKELGLEPGKVSKWFKNARY 552
                    577899**************************************97 PP
2PHD35.42.5e-12244298150
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
            PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                    +C+ C++     ++++vlCd +C+  fH+ Cl+++l++e++p g   w+C+ C++
  29671.m000294 244 FCAKCKSneVSPDNDIVLCDgTCNCGFHQRCLDPPLDTENIPPGdqGWYCKFCEC 298
                    6999**975556********56********************9999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.44E-13236302IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-11240299IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.416242299IPR019787Zinc finger, PHD-finger
SMARTSM002491.0E-7244297IPR001965Zinc finger, PHD-type
PfamPF006281.2E-9244298IPR019787Zinc finger, PHD-finger
CDDcd155042.28E-31244296No hitNo description
PROSITE patternPS013590245296IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.1E-12488551IPR009057Homeodomain-like
SuperFamilySSF466893.17E-10493554IPR009057Homeodomain-like
PROSITE profilePS5007112.082497557IPR001356Homeobox domain
SMARTSM003891.3E-9499561IPR001356Homeobox domain
CDDcd000869.43E-9500559No hitNo description
PfamPF000462.2E-8507552IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MRGTGKKAKN QESGKSCFSN SENGSMLIAS LKLRKDKTIP HCKRGKPKPK SQLKATGGSR  60
LKRVATDPSS KGIKNGYTTN TKMICKKILQ KAIDKKSSTK KLTSKVRRGK RLPAIGCEDN  120
GKEPNEDVNV TVKKLNRRKK NKRGQKEKVK LDEPSRLQRR TKYLMIKMKL EQNLIDAYSG  180
EGWKGQSREK IKPEKELVRA KKQILKCKLG IRDAIHQLDS LSTVGCIEDS VIAPDGSVSH  240
EHIFCAKCKS NEVSPDNDIV LCDGTCNCGF HQRCLDPPLD TENIPPGDQG WYCKFCECRM  300
EIIEAMNAHL GTQFSVDSCW QDIFQEEATF SDGGGILLNP EEEWPSDDSE DDDYDPGSQD  360
NSISGAGTDD DASDNASSAT SLGWSSDGEV LSGSRKWDMG DTYFRNQFIY SSLDSDETSD  420
GEIVCGRRQR RAVDYKKLYD EMFGKDAQEH EQVSEDEDWG PGKRKRREKE SDAASTLMTL  480
YESEKTSKKV KKHSRDPQVK RPLFRIPPSA VEKLRQVFAE NELPSRTIKE NLSKELGLEP  540
GKVSKWFKNA RYLALKSRKA DRTSELYSSS PEIPREPKLD AVNKITADLA ELRATSSETK  600
IYSPKSLKQI LQRKESKSMS SSPKKTTLQR TPTESLSKSN EISVEYSDDL SLKKLLKSKA  660
KRGKKRVNSI SRRASQMAEA EMEKLCRVKV RLENLKQKLL RLQNGKARKT IRNQWQQESV  720
ILVPIAELRE KN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131137VKKLNRR
2135142NRRKKNKR
3463468RKRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29671.m000294
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527803.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-152PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLB9SP840.0B9SP84_RICCO; Uncharacterized protein
STRINGXP_002527803.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-148pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]