PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29673.m000906
Common NameRCOM_0596940
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 302aa    MW: 33854.4 Da    PI: 5.7475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29673.m000906genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.32.1e-082358440
            NAM  4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiy 40
                    frF+P+d+el+++yL +k++g++l+l + i e+diy
  29673.m000906 23 SFRFNPKDDELLSYYLSNKIKGTPLPL-NLIVECDIY 58
                   59*************************.89*****99 PP
2NAM23.12.1e-076212377128
            NAM  77 atksgyWkatgkdkevlsk.kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                    ++  g W+   + kev+++  ++++g++k + f          + +++k+e t W+mhey++
  29673.m000906  62 TAGGGEWHGNKSGKEVMDRkIKKVIGVQKQFSFKprkgkkgasSTSTSKAEATGWIMHEYSM 123
                    567899***********9855677**********988876655467778889********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.0081142IPR003441NAC domain
SuperFamilySSF1019418.11E-1920131IPR003441NAC domain
PfamPF023656.1E-1424122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSCEIAKESI VATVRVFESG FLSFRFNPKD DELLSYYLSN KIKGTPLPLN LIVECDIYGD  60
KTAGGGEWHG NKSGKEVMDR KIKKVIGVQK QFSFKPRKGK KGASSTSTSK AEATGWIMHE  120
YSMMGEKNSD DGYWRGCYGR KCGAHQVHLI QDDKINNGEA VPPENAMFDQ VDMIEDGNQI  180
NNGGLYNQLN NCEAAMAENV RLDQEYVDGG GNQINNGGPA AMTGADVMKN AAEPHVELQT  240
EYGVEPEWVY LEKGSWFYDF DPVEIACMFW MMLLRRTLLV RNLPCKGRMT QDKKILKGPY  300
IN
Cis-element ? help Back to Top
SourceLink
PlantRegMap29673.m000906
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525963.11e-105NAC domain-containing protein 53
TrEMBLB9SIZ00.0B9SIZ0_RICCO; Uncharacterized protein
STRINGXP_002525959.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2731723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-07NAC domain containing protein 52