PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29673.m000910
Common NameLOC8277315, RCOM_0596980
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 375aa    MW: 41727.6 Da    PI: 4.9072
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29673.m000910genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.73.1e-2991421128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    lppG+rF+Ptd+el+++yL +k++g +l+l + i e+diy    Pw++   +  +++e+yfF++ +k++  ++r  r+++ g W+   + kev+++
  29673.m000910   9 LPPGIRFNPTDDELISYYLSNKIKGIPLPL-NLIVECDIYGDkPPWEIC--HGRKQEECYFFTTLKKAS--KNRVARTAAGGEWRGNNSGKEVMDR 99 
                    79****************************.89*******87368***6..4567889*****998875..57****99***************99 PP

            NAM  96 .kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                     +++++g+kk ++f            ++++++ t W+mhey+l
  29673.m000910 100 kTKKVIGVKKQFTFKprkgkkgtsCTSTSNAKATGWIMHEYSL 142
                    66778**********876664443256677789********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-335159IPR003441NAC domain
PROSITE profilePS5100536.0179160IPR003441NAC domain
PfamPF023653.3E-2110142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTINDVLPLP PGIRFNPTDD ELISYYLSNK IKGIPLPLNL IVECDIYGDK PPWEICHGRK  60
QEECYFFTTL KKASKNRVAR TAAGGEWRGN NSGKEVMDRK TKKVIGVKKQ FTFKPRKGKK  120
GTSCTSTSNA KATGWIMHEY SLMGGKDSSD GYALCHITKH CRGQKKDDDG EPIIITNQLV  180
FDRYVSSQEA RPGEFNNQVN IGGFYQGYAF EDADNQNNSG EAAMAENLAR HQVHLIKDGD  240
QINNREAVVA ENAMFDQVRM IEDGNQIKNG GLYAIEDADD QLNNREVVMG ETLMFDQAYV  300
NEGGNQINNG SPTAMTGAGI ITNTVAPREE LQTEYGMEPE WAYLEKGSWF SDFDPAEIAR  360
MSTALDDAIA KNAFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-18714213140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29673.m000910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525963.10.0NAC domain-containing protein 53
TrEMBLB9SIZ40.0B9SIZ4_RICCO; Transcription factor, putative
STRINGXP_002525963.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2731723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-23NAC domain containing protein 41