PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29676.m001634

Common Name

RCOM_0602130

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 424aa MW: 49683.9 Da PI: 4.976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29676.m001634	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.4	6.6e-35	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+++C++ap++p + ++f+n+h+++Gasnvlkl+++l++++r +a++sl+yeA r+r+PvyG+++ il l+++++ql a++ + 29676.m001634 8 PCAACKHLRRKCSSECIFAPHLPPDMLENFKNLHEVYGASNVLKLIRKLDPSKRGEAIRSLAYEATERLRNPVYGCAADILFLESRIQQLLAQIPV 103 7********************************************************************************************999 PP DUF260 97 lkee 100 +++e 29676.m001634 104 ARQE 107 8887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.15	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-34	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MSERDRQPCA ACKHLRRKCS SECIFAPHLP PDMLENFKNL HEVYGASNVL KLIRKLDPSK 60 RGEAIRSLAY EATERLRNPV YGCAADILFL ESRIQQLLAQ IPVARQELSI YMPPPTAFQP 120 TLPQQSYMTP PPPQQQQDEG GNRPSISNDV ENFMNQQFLQ QRYQHLIQAQ QSAAILEQPG 180 MLSTYEQQQQ FLLHQQQQQQ QRQYHLLLQQ HQQQQFLEQQ QQHQKQQSLE QHQQEDRQVL 240 QEQQQRLPFF PLEPQWQDVQ EGHQVFQQQQ QQERQDLQEQ QQGLPFSQQE QQQGLSFFPL 300 GPQQGLPFSQ QEQRRGLPFS SLEPQWQDAQ EGHQRFQQQQ QQDRQQQQGL PLSQLEQQGQ 360 QFFQVERQRQ ERQEQDYLSP DIGCEGGGSA TSTGVAVELS LRPPHPQDSQ LQQEKSENEE 420 AMEF

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MSERDRQPCA ACKHLRRKCS SECIFAPHLP PDMLENFKNL HEVYGASNVL KLIRKLDPSK  60
RGEAIRSLAY EATERLRNPV YGCAADILFL ESRIQQLLAQ IPVARQELSI YMPPPTAFQP  120
TLPQQSYMTP PPPQQQQDEG GNRPSISNDV ENFMNQQFLQ QRYQHLIQAQ QSAAILEQPG  180
MLSTYEQQQQ FLLHQQQQQQ QRQYHLLLQQ HQQQQFLEQQ QQHQKQQSLE QHQQEDRQVL  240
QEQQQRLPFF PLEPQWQDVQ EGHQVFQQQQ QQERQDLQEQ QQGLPFSQQE QQQGLSFFPL  300
GPQQGLPFSQ QEQRRGLPFS SLEPQWQDAQ EGHQRFQQQQ QQDRQQQQGL PLSQLEQQGQ  360
QFFQVERQRQ ERQEQDYLSP DIGCEGGGSA TSTGVAVELS LRPPHPQDSQ LQQEKSENEE  420
AMEF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-27	8	111	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-27	8	111	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29676.m001634

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B9S8K7	0.0	B9S8K7_RICCO; Uncharacterized protein
STRING	XP_002522326.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-32	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	29676.m001634