PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001674
Common NameLOC8260561, RCOM_0603540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 306aa    MW: 34653.4 Da    PI: 10.4832
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001674genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55.2e-1817104194
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    ffkvl+  ++ k   +++p  f+ +++++   + t++l++   g+s  v +  + ++++++++ GWk+Fvk+++L++gDf+vF l+++++fe ++
  29676.m001674  17 FFKVLMGDYMEK---IMIPPAFVMKYEKIM--PETIKLKSyNVGKSSMVSV--KSNDDGFFIKHGWKKFVKDHNLEVGDFLVFNLVNDTTFEVLI 104
                    788886655554...68*********9885..558999998899*******..********************************9988885544 PP
2B344.62.7e-142072751284
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                    k  ++v+p++fa+++g++++  ++ ++ed+ gr+W v ++   +++++ l++GW+ F +an+L +gD++ ++ 
  29676.m001674 207 KY-NVVVPRRFADKIGLQNK--RKTVIEDPLGRQWPVFVN-LVGGNQVHLSTGWSAFYQANRLVTGDILSLHS 275
                    33.499*********99954..47888************6.45556677999*****************9983 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.99914108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-2314110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2014110IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-1517103IPR003340B3 DNA binding domain
SMARTSM010192.3E-1517108IPR003340B3 DNA binding domain
CDDcd100179.17E-1817105No hitNo description
Gene3DG3DSA:2.40.330.102.4E-15193274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-15194274IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.11195291IPR003340B3 DNA binding domain
CDDcd100176.16E-11196283No hitNo description
SMARTSM010194.5E-4197291IPR003340B3 DNA binding domain
PfamPF023622.4E-12207276IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEMAMKPTQN PDRKITFFKV LMGDYMEKIM IPPAFVMKYE KIMPETIKLK SYNVGKSSMV  60
SVKSNDDGFF IKHGWKKFVK DHNLEVGDFL VFNLVNDTTF EVLIYGPTCC LKKIKLADDD  120
DHVDQNKNST SKFTSTASGS KQISFKKRAC PKLSQFKRPR GSAKKTGKKA KRPRIFKGKT  180
EVNKKESIAE EETKHPCVKL VLKEYQKYNV VVPRRFADKI GLQNKRKTVI EDPLGRQWPV  240
FVNLVGGNQV HLSTGWSAFY QANRLVTGDI LSLHSRQVHG NLINVEIQKG GGEIAKAEPA  300
LLPKTG
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001674
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522365.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLB9S8P60.0B9S8P6_RICCO; Uncharacterized protein
STRINGXP_002522365.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-15B3 family protein