PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001675
Common NameRCOM_0603550
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 145aa    MW: 16977.6 Da    PI: 7.989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001675genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.6e-1452134188
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    f k  ++ d  +++ +++p +  +eh + +     +       rsW vk+   ++++ + + +GW  F kan LkegD+++F+l++++
  29676.m001675  52 FYKSVVHVDCERRSFVTIPVRISKEHFQFES---SIFTLRFAERSWHVKV--INYRKLTKICAGWAAFTKANYLKEGDVCIFELIENH 134
                    668889999999**************54433...366666788*******..8888888899*********************99864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-1751142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.19452144IPR003340B3 DNA binding domain
PfamPF023622.7E-1152133IPR003340B3 DNA binding domain
CDDcd100175.45E-1152132No hitNo description
Gene3DG3DSA:2.40.330.103.9E-1852142IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-452144IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVLHLVVQWL GVRIGLTENL EVRNFKQLTW EDNAGAYQAL EAANNFISSY PFYKSVVHVD  60
CERRSFVTIP VRISKEHFQF ESSIFTLRFA ERSWHVKVIN YRKLTKICAG WAAFTKANYL  120
KEGDVCIFEL IENHVLNVFT FECVH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001675
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012079137.15e-32B3 domain-containing transcription factor VRN1
TrEMBLB9S8P71e-103B9S8P7_RICCO; Uncharacterized protein
STRINGXP_002522366.11e-104(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-10B3 family protein